Visit the Chong Lab GitHub organization for the full list.
All | Inspector_protocol | Inspector | FusionSeeker | DeBreak | B-assembler | ClipSV | MRLR | novoBreak | rainbow
Inspector_protocol
Example workflows for evaluating long-read genome assemblies with Inspector.
Inspector
A reference-free assembly evaluator.
FusionSeeker
A gene-fusion caller for long-read single-molecule sequencing data.
DeBreak
A structural-variant caller for long-read single-molecule sequencing data.
B-assembler
A Snakemake-based pipeline for assembling bacterial genomes from Oxford Nanopore, PacBio, or hybrid long- and short-read data.
ClipSV
ClipSV is a method for structural-variant detection based on read extension, spliced alignment, and local assembly.
MRLR
MRLR is a pipeline for identifying meiotic recombination events in trios using whole-genome 10X Genomics sequencing data.
novoBreak
A local-assembly method for detecting somatic and germline structural-variant breakpoints in Illumina paired-end sequencing data.
rainbow
The Rainbow package consists of several programs for RAD-seq-related clustering and de novo assembly.